STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rnf170Ring finger protein 170. (261 aa)    
Predicted Functional Partners:
tmub1
Transmembrane and ubiquitin-like domain containing 1.
    
 
 0.656
LOC101067994
ER lipid raft associated 1.
    
 
 0.644
ube2j1
Ubiquitin-conjugating enzyme E2, J1.
    
 
 0.619
LOC101072418
Cholesterol 25-hydroxylase like 3.
    
 
 0.611
blm
BLM RecQ like helicase.
    
 
 0.576
C17h6orf120
Zgc:77929.
      
 0.566
tmem259
Transmembrane protein 259.
      
 0.491
recql5
ATP-dependent DNA helicase; Belongs to the helicase family. RecQ subfamily.
    
 
 0.448
rnf41
Ring finger protein 41.
   
  
 0.441
tor2a
Torsin family 2, member A.
      
 0.434
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.