rtkn protein (Takifugu rubripes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

rtkn

Rhotekin. (722 aa)

Predicted Functional Partners:

LOC101076147

0.645

LOC101070117

0.645

LOC101064166

0.645

LOC101071942

0.645

LOC101077509

0.645

rnd3

0.590

LOC101064615

0.590

RND1

0.590

tax1bp3

0.581

LOC101075302

0.573

Your Current Organism:

Takifugu rubripes

NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC101064166	LOC101070117	ENSTRUP00000062293	ENSTRUP00000051209	Uncharacterized protein.	Ras homolog gene family, member Aa.	0.900
LOC101064166	LOC101076147	ENSTRUP00000062293	ENSTRUP00000027633	Uncharacterized protein.	Uncharacterized protein.	0.900
LOC101064166	rtkn	ENSTRUP00000062293	ENSTRUP00000001974	Uncharacterized protein.	Rhotekin.	0.645
LOC101064166	tax1bp3	ENSTRUP00000062293	ENSTRUP00000053716	Uncharacterized protein.	Tax1 (human T-cell leukemia virus type I) binding protein 3.	0.463
LOC101064615	rtkn	ENSTRUP00000079897	ENSTRUP00000001974	Rho family GTPase 1b.	Rhotekin.	0.590
LOC101064615	tax1bp3	ENSTRUP00000079897	ENSTRUP00000053716	Rho family GTPase 1b.	Tax1 (human T-cell leukemia virus type I) binding protein 3.	0.443
LOC101070117	LOC101064166	ENSTRUP00000051209	ENSTRUP00000062293	Ras homolog gene family, member Aa.	Uncharacterized protein.	0.900
LOC101070117	LOC101076147	ENSTRUP00000051209	ENSTRUP00000027633	Ras homolog gene family, member Aa.	Uncharacterized protein.	0.900
LOC101070117	rtkn	ENSTRUP00000051209	ENSTRUP00000001974	Ras homolog gene family, member Aa.	Rhotekin.	0.645
LOC101070117	tax1bp3	ENSTRUP00000051209	ENSTRUP00000053716	Ras homolog gene family, member Aa.	Tax1 (human T-cell leukemia virus type I) binding protein 3.	0.463
LOC101071942	rtkn	ENSTRUP00000079850	ENSTRUP00000001974	Uncharacterized protein.	Rhotekin.	0.645
LOC101071942	tax1bp3	ENSTRUP00000079850	ENSTRUP00000053716	Uncharacterized protein.	Tax1 (human T-cell leukemia virus type I) binding protein 3.	0.463
LOC101075302	rtkn	ENSTRUP00000024663	ENSTRUP00000001974	Ras homolog family member F.	Rhotekin.	0.573
LOC101075302	tax1bp3	ENSTRUP00000024663	ENSTRUP00000053716	Ras homolog family member F.	Tax1 (human T-cell leukemia virus type I) binding protein 3.	0.431
LOC101076147	LOC101064166	ENSTRUP00000027633	ENSTRUP00000062293	Uncharacterized protein.	Uncharacterized protein.	0.900
LOC101076147	LOC101070117	ENSTRUP00000027633	ENSTRUP00000051209	Uncharacterized protein.	Ras homolog gene family, member Aa.	0.900
LOC101076147	rtkn	ENSTRUP00000027633	ENSTRUP00000001974	Uncharacterized protein.	Rhotekin.	0.645
LOC101076147	tax1bp3	ENSTRUP00000027633	ENSTRUP00000053716	Uncharacterized protein.	Tax1 (human T-cell leukemia virus type I) binding protein 3.	0.463
LOC101077509	rtkn	ENSTRUP00000087725	ENSTRUP00000001974	Ras homolog family member Ca.	Rhotekin.	0.645
LOC101077509	tax1bp3	ENSTRUP00000087725	ENSTRUP00000053716	Ras homolog family member Ca.	Tax1 (human T-cell leukemia virus type I) binding protein 3.	0.463