mrpl2 protein (Takifugu rubripes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

mrpl2

Mitochondrial ribosomal protein L2. (310 aa)

Predicted Functional Partners:

mrpl16

0.997

mrpl9

0.996

mrpl22

0.995

mrpl20

0.995

mrpl17

0.994

rpl23

0.992

mrpl58

0.992

mrpl24

0.991

Mrpl21

0.988

mrpl32

0.988

Your Current Organism:

Takifugu rubripes

NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Mrpl21	mrpl16	ENSTRUP00000015393	ENSTRUP00000044138	Uncharacterized protein.	Mitochondrial ribosomal protein L16.	0.982
Mrpl21	mrpl17	ENSTRUP00000015393	ENSTRUP00000059125	Uncharacterized protein.	Mitochondrial ribosomal protein L17.	0.993
Mrpl21	mrpl2	ENSTRUP00000015393	ENSTRUP00000002152	Uncharacterized protein.	Mitochondrial ribosomal protein L2.	0.988
Mrpl21	mrpl20	ENSTRUP00000015393	ENSTRUP00000079172	Uncharacterized protein.	Mitochondrial ribosomal protein L20; Belongs to the bacterial ribosomal protein bL20 family.	0.995
Mrpl21	mrpl22	ENSTRUP00000015393	ENSTRUP00000053361	Uncharacterized protein.	Mitochondrial ribosomal protein L22; Belongs to the universal ribosomal protein uL22 family.	0.971
Mrpl21	mrpl24	ENSTRUP00000015393	ENSTRUP00000034709	Uncharacterized protein.	Mitochondrial ribosomal protein L24; Belongs to the universal ribosomal protein uL24 family.	0.975
Mrpl21	mrpl32	ENSTRUP00000015393	ENSTRUP00000036591	Uncharacterized protein.	Mitochondrial ribosomal protein L32.	0.988
Mrpl21	mrpl58	ENSTRUP00000015393	ENSTRUP00000088418	Uncharacterized protein.	Mitochondrial ribosomal protein L58.	0.981
Mrpl21	mrpl9	ENSTRUP00000015393	ENSTRUP00000062400	Uncharacterized protein.	Mitochondrial ribosomal protein L9.	0.992
Mrpl21	rpl23	ENSTRUP00000015393	ENSTRUP00000065488	Uncharacterized protein.	Ribosomal protein L23; Belongs to the universal ribosomal protein uL14 family.	0.986
mrpl16	Mrpl21	ENSTRUP00000044138	ENSTRUP00000015393	Mitochondrial ribosomal protein L16.	Uncharacterized protein.	0.982
mrpl16	mrpl17	ENSTRUP00000044138	ENSTRUP00000059125	Mitochondrial ribosomal protein L16.	Mitochondrial ribosomal protein L17.	0.982
mrpl16	mrpl2	ENSTRUP00000044138	ENSTRUP00000002152	Mitochondrial ribosomal protein L16.	Mitochondrial ribosomal protein L2.	0.997
mrpl16	mrpl20	ENSTRUP00000044138	ENSTRUP00000079172	Mitochondrial ribosomal protein L16.	Mitochondrial ribosomal protein L20; Belongs to the bacterial ribosomal protein bL20 family.	0.985
mrpl16	mrpl22	ENSTRUP00000044138	ENSTRUP00000053361	Mitochondrial ribosomal protein L16.	Mitochondrial ribosomal protein L22; Belongs to the universal ribosomal protein uL22 family.	0.986
mrpl16	mrpl24	ENSTRUP00000044138	ENSTRUP00000034709	Mitochondrial ribosomal protein L16.	Mitochondrial ribosomal protein L24; Belongs to the universal ribosomal protein uL24 family.	0.970
mrpl16	mrpl32	ENSTRUP00000044138	ENSTRUP00000036591	Mitochondrial ribosomal protein L16.	Mitochondrial ribosomal protein L32.	0.976
mrpl16	mrpl58	ENSTRUP00000044138	ENSTRUP00000088418	Mitochondrial ribosomal protein L16.	Mitochondrial ribosomal protein L58.	0.949
mrpl16	mrpl9	ENSTRUP00000044138	ENSTRUP00000062400	Mitochondrial ribosomal protein L16.	Mitochondrial ribosomal protein L9.	0.980
mrpl16	rpl23	ENSTRUP00000044138	ENSTRUP00000065488	Mitochondrial ribosomal protein L16.	Ribosomal protein L23; Belongs to the universal ribosomal protein uL14 family.	0.983