Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Adgrv1Uncharacterized protein. (873 aa)    
Predicted Functional Partners:
LOC101065208
Usher syndrome 1C.
    
 
 0.892
stox1
Storkhead box 1.
      
 0.881
rpgrip1l
RPGRIP1 like.
      
 0.813
slc26a5
Solute carrier family 26 member 5.
      
 0.743
H2V7V0_TAKRU
Uncharacterized protein.
      
 0.738
PDZD7
PDZ domain-containing protein.
    
 
 0.727
H2U5D5_TAKRU
PDZ domain containing 7a.
    
 
 0.727
tectb
Tectorin beta.
      
 0.725
ttc8
Tetratricopeptide repeat domain 8.
      
 0.725
atp8a1
Phospholipid-transporting ATPase; Belongs to the cation transport ATPase (P-type) (TC 3.A.3) family. Type IV subfamily.
    
 
 0.707
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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