Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC101064443Uncharacterized protein. (1293 aa)    
Predicted Functional Partners:
LOC101067730
Uncharacterized protein.
   
 0.803
rab27a
RAB27A, member RAS oncogene family.
   
 0.803
LOC101071476
RAB27B, member RAS oncogene family.
   
 0.803
LOC101077791
Uncharacterized protein.
     
 0.544
LOC101072388
TBC1 domain family, member 10Ab.
     
  0.532
tbc1d10a
TBC1 domain family, member 10Aa.
     
  0.532
tbc1d10b
TBC1 domain family, member 10b.
     
  0.532
LOC101064983
RabBD domain-containing protein.
     
 0.521
stxbp2
Syntaxin binding protein 2; Belongs to the STXBP/unc-18/SEC1 family.
    
 0.516
LOC101062144
t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family.
    
 0.483
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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