Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
myogMyogenin. (250 aa)    
Predicted Functional Partners:
fbxo25
F-box protein 25.
    
 
 0.935
mymk
Myomaker, myoblast fusion factor.
   
  
 0.884
id2
Inhibitor of DNA binding 2a.
    
 
 0.872
fbxo32
F-box protein 32.
    
 
 0.843
LOC101078593
Myristoylated alanine-rich protein kinase C substrate b.
      
 0.803
LOC101061607
Matrix metallopeptidase 14b (membrane-inserted).
    
 
 0.798
LOC101066372
MADS-box domain-containing protein.
   
 
 0.797
srf
Serum response factor b.
   
 
 0.797
LOC446041
Myostatin b.
   
  
 0.789
mef2d
Myocyte enhancer factor 2d.
    
 0.788
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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