Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
atg4dCysteine protease; Cysteine protease required for the cytoplasm to vacuole transport (Cvt) and autophagy; Belongs to the peptidase C54 family. (499 aa)    
Predicted Functional Partners:
GABARAPL2
GABA(A) receptor-associated protein like 2.
   
 0.983
LOC101065324
Microtubule-associated protein 1 light chain 3 beta.
   
 0.978
map1lc3c
Microtubule-associated protein 1 light chain 3 gamma.
   
 0.974
LOC101062775
Microtubule-associated protein 1 light chain 3 gamma, like.
   
 0.968
LOC101076880
Zgc:92606.
   
 0.968
atg4b
Cysteine protease; Cysteine protease required for the cytoplasm to vacuole transport (Cvt) and autophagy; Belongs to the peptidase C54 family.
  
 
0.943
atg4c
Cysteine protease; Cysteine protease required for the cytoplasm to vacuole transport (Cvt) and autophagy; Belongs to the peptidase C54 family.
  
  
 
0.904
LOC101076890
Uncharacterized protein.
   
 0.840
gabarap
GABA(A) receptor-associated protein b.
   
 0.840
atg3
Autophagy-related protein 3.
   
 
 0.838
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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