Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
nup58Nucleoporin 58. (566 aa)    
Predicted Functional Partners:
NUP54
Nucleoporin 54.
   
 0.999
NUP62
Nucleoporin 62.
   
 0.993
nup93
Nuclear pore complex protein Nup93; Plays a role in the nuclear pore complex (NPC) assembly and/or maintenance; Belongs to the nucleoporin interacting component (NIC) family.
   
 0.986
nup155
Nucleoporin 153.
   
 0.978
nxf1
Zgc:153681.
   
 0.978
nup35
Nucleoporin 35.
    
 0.969
nup88
Nucleoporin 88.
   
 0.965
nup153
Nucleoporin 153.
   
 0.962
nup205
Nucleoporin 205.
   
 0.962
nup188
Nucleoporin 188.
    
 0.958
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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