Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
crb2Crumbs cell polarity complex component 2b. (1419 aa)    
Predicted Functional Partners:
mpp5
Membrane protein, palmitoylated 5b (MAGUK p55 subfamily member 5); Belongs to the MAGUK family.
    
 0.770
MPP5
Membrane palmitoylated protein 5; Belongs to the MAGUK family.
    
 0.770
LOC101078076
DENN/MADD domain containing 1A.
    
 
 0.702
rab35
RAB35, member RAS oncogene family b.
      
 0.586
epb41l5
Erythrocyte membrane protein band 4.1 like 5.
    
 
 0.585
Zpr1
Zpr1 domain-containing protein.
      
 0.516
LOC101076945
Uncharacterized protein.
      
 0.476
Patj
InaD-like protein isoform X1.
    
 0.473
rabif
RAB interacting factor.
      
 0.452
rbpjl
Recombining binding protein suppressor of hairless-like protein isoform X1.
    
 0.442
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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