Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
mrpl57Mitochondrial ribosomal protein L57. (103 aa)    
Predicted Functional Partners:
ndufab1
Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.
   
  0.961
mrpl52
Mitochondrial ribosomal protein L52.
   
 
 0.954
mrpl1
Mitochondrial ribosomal protein L1.
    
 
 0.952
gadd45gip1
Growth arrest and DNA-damage-inducible, gamma interacting protein 1.
   
   0.945
mrpl28
Mitochondrial ribosomal protein L28.
    
   0.945
mrpl47
Mitochondrial ribosomal protein L47.
   
 
 0.937
mrps30
Mitochondrial ribosomal protein S30.
   
   0.932
H2UD51_TAKRU
Mitochondrial ribosomal protein L41.
   
 
 0.929
mrpl39
Mitochondrial ribosomal protein L39.
    
   0.921
mrpl4
Mitochondrial ribosomal protein L4.
   
   0.919
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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