Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
armc3Armadillo repeat-containing protein 3 isoform X1. (849 aa)    
Predicted Functional Partners:
efcab1
Uncharacterized protein.
   
 
 0.958
iqub
IQ motif and ubiquitin domain containing.
   
 
 0.943
LOC101061845
NME/NM23 family member 8; Belongs to the NDK family.
   
 
 0.895
ccdc96
DUF4201 domain-containing protein.
   
 
 0.885
cfap52
Cilia and flagella associated protein 52.
   
 
 0.864
fam183a
Family with sequence similarity 183 member A.
   
 
 0.821
tekt3
Tektin 3.
   
 
 0.778
ENSTRUP00000085869
Uncharacterized protein.
   
 
 0.776
tekt2
Tektin 2 (testicular).
   
 
 0.774
ttc25
Tetratricopeptide repeat domain 25.
   
 
 0.768
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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