apoa-iv3 protein (Takifugu rubripes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

apoa-iv3

Uncharacterized protein. (255 aa)

Predicted Functional Partners:

H2RM54_TAKRU

0.978

ENSTRUP00000074430

0.978

LOC101066818

0.978

lcat

0.977

apoe2

0.964

apoe1

0.928

cetp

0.892

ENSTRUP00000077462

0.887

apoa-i

0.862

mis12

0.855

Your Current Organism:

Takifugu rubripes

NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSTRUP00000074430	H2RM54_TAKRU	ENSTRUP00000074430	ENSTRUP00000001217	annotation not available	Vitellogenin domain-containing protein.	0.672
ENSTRUP00000074430	LOC101066818	ENSTRUP00000074430	ENSTRUP00000087964	annotation not available	Apolipoprotein Bb, tandem duplicate 2.	0.540
ENSTRUP00000074430	apoa-i	ENSTRUP00000074430	ENSTRUP00000087291	annotation not available	Uncharacterized protein.	0.945
ENSTRUP00000074430	apoa-iv3	ENSTRUP00000074430	ENSTRUP00000004267	annotation not available	Uncharacterized protein.	0.978
ENSTRUP00000074430	apoe1	ENSTRUP00000074430	ENSTRUP00000030259	annotation not available	Uncharacterized protein.	0.891
ENSTRUP00000074430	apoe2	ENSTRUP00000074430	ENSTRUP00000074375	annotation not available	Apolipoprotein E2.	0.938
ENSTRUP00000074430	cetp	ENSTRUP00000074430	ENSTRUP00000070450	annotation not available	Cholesteryl ester transfer protein.	0.874
ENSTRUP00000074430	lcat	ENSTRUP00000074430	ENSTRUP00000082709	annotation not available	Lecithin-cholesterol acyltransferase.	0.547
ENSTRUP00000077462	apoa-i	ENSTRUP00000077462	ENSTRUP00000087291	annotation not available	Uncharacterized protein.	0.858
ENSTRUP00000077462	apoa-iv3	ENSTRUP00000077462	ENSTRUP00000004267	annotation not available	Uncharacterized protein.	0.887
ENSTRUP00000077462	apoe1	ENSTRUP00000077462	ENSTRUP00000030259	annotation not available	Uncharacterized protein.	0.689
ENSTRUP00000077462	apoe2	ENSTRUP00000077462	ENSTRUP00000074375	annotation not available	Apolipoprotein E2.	0.689
ENSTRUP00000077462	cetp	ENSTRUP00000077462	ENSTRUP00000070450	annotation not available	Cholesteryl ester transfer protein.	0.577
H2RM54_TAKRU	ENSTRUP00000074430	ENSTRUP00000001217	ENSTRUP00000074430	Vitellogenin domain-containing protein.	annotation not available	0.672
H2RM54_TAKRU	LOC101066818	ENSTRUP00000001217	ENSTRUP00000087964	Vitellogenin domain-containing protein.	Apolipoprotein Bb, tandem duplicate 2.	0.554
H2RM54_TAKRU	apoa-i	ENSTRUP00000001217	ENSTRUP00000087291	Vitellogenin domain-containing protein.	Uncharacterized protein.	0.945
H2RM54_TAKRU	apoa-iv3	ENSTRUP00000001217	ENSTRUP00000004267	Vitellogenin domain-containing protein.	Uncharacterized protein.	0.978
H2RM54_TAKRU	apoe1	ENSTRUP00000001217	ENSTRUP00000030259	Vitellogenin domain-containing protein.	Uncharacterized protein.	0.891
H2RM54_TAKRU	apoe2	ENSTRUP00000001217	ENSTRUP00000074375	Vitellogenin domain-containing protein.	Apolipoprotein E2.	0.938
H2RM54_TAKRU	cetp	ENSTRUP00000001217	ENSTRUP00000070450	Vitellogenin domain-containing protein.	Cholesteryl ester transfer protein.	0.874