meox2 protein (Takifugu rubripes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

meox2

Mesenchyme homeobox 2b. (267 aa)

Predicted Functional Partners:

meox1

0.927

pax9

0.908

pax1

0.671

LOC101074759

0.608

babam2

0.601

H2SKN2_TAKRU

0.591

nup93

0.566

anapc5

0.562

tbx22

0.561

BAZ1A

0.553

Your Current Organism:

Takifugu rubripes

NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BAZ1A	anapc5	ENSTRUP00000018575	ENSTRUP00000041803	Bromodomain adjacent to zinc finger domain 1A.	Anaphase promoting complex subunit 5.	0.584
BAZ1A	meox2	ENSTRUP00000018575	ENSTRUP00000004634	Bromodomain adjacent to zinc finger domain 1A.	Mesenchyme homeobox 2b.	0.553
BAZ1A	nup93	ENSTRUP00000018575	ENSTRUP00000022455	Bromodomain adjacent to zinc finger domain 1A.	Nuclear pore complex protein Nup93; Plays a role in the nuclear pore complex (NPC) assembly and/or maintenance; Belongs to the nucleoporin interacting component (NIC) family.	0.583
H2SKN2_TAKRU	meox2	ENSTRUP00000012966	ENSTRUP00000004634	DNA (cytosine-5-)-methyltransferase 3 beta, duplicate a; Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family.	Mesenchyme homeobox 2b.	0.591
LOC101074759	meox2	ENSTRUP00000082990	ENSTRUP00000004634	Alpha-L-fucosidase 2.	Mesenchyme homeobox 2b.	0.608
anapc5	BAZ1A	ENSTRUP00000041803	ENSTRUP00000018575	Anaphase promoting complex subunit 5.	Bromodomain adjacent to zinc finger domain 1A.	0.584
anapc5	babam2	ENSTRUP00000041803	ENSTRUP00000086985	Anaphase promoting complex subunit 5.	BRISC and BRCA1 A complex member 2.	0.431
anapc5	meox2	ENSTRUP00000041803	ENSTRUP00000004634	Anaphase promoting complex subunit 5.	Mesenchyme homeobox 2b.	0.562
anapc5	nup93	ENSTRUP00000041803	ENSTRUP00000022455	Anaphase promoting complex subunit 5.	Nuclear pore complex protein Nup93; Plays a role in the nuclear pore complex (NPC) assembly and/or maintenance; Belongs to the nucleoporin interacting component (NIC) family.	0.608
babam2	anapc5	ENSTRUP00000086985	ENSTRUP00000041803	BRISC and BRCA1 A complex member 2.	Anaphase promoting complex subunit 5.	0.431
babam2	meox2	ENSTRUP00000086985	ENSTRUP00000004634	BRISC and BRCA1 A complex member 2.	Mesenchyme homeobox 2b.	0.601
babam2	nup93	ENSTRUP00000086985	ENSTRUP00000022455	BRISC and BRCA1 A complex member 2.	Nuclear pore complex protein Nup93; Plays a role in the nuclear pore complex (NPC) assembly and/or maintenance; Belongs to the nucleoporin interacting component (NIC) family.	0.473
meox1	meox2	ENSTRUP00000012469	ENSTRUP00000004634	Mesenchyme homeobox 1.	Mesenchyme homeobox 2b.	0.927
meox1	pax1	ENSTRUP00000012469	ENSTRUP00000067225	Mesenchyme homeobox 1.	Paired box 1a.	0.492
meox1	pax9	ENSTRUP00000012469	ENSTRUP00000061100	Mesenchyme homeobox 1.	Paired box 9.	0.629
meox2	BAZ1A	ENSTRUP00000004634	ENSTRUP00000018575	Mesenchyme homeobox 2b.	Bromodomain adjacent to zinc finger domain 1A.	0.553
meox2	H2SKN2_TAKRU	ENSTRUP00000004634	ENSTRUP00000012966	Mesenchyme homeobox 2b.	DNA (cytosine-5-)-methyltransferase 3 beta, duplicate a; Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family.	0.591
meox2	LOC101074759	ENSTRUP00000004634	ENSTRUP00000082990	Mesenchyme homeobox 2b.	Alpha-L-fucosidase 2.	0.608
meox2	anapc5	ENSTRUP00000004634	ENSTRUP00000041803	Mesenchyme homeobox 2b.	Anaphase promoting complex subunit 5.	0.562
meox2	babam2	ENSTRUP00000004634	ENSTRUP00000086985	Mesenchyme homeobox 2b.	BRISC and BRCA1 A complex member 2.	0.601