LOC101077756 protein (Takifugu rubripes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

LOC101077756

Proteasome subunit beta. (275 aa)

Predicted Functional Partners:

psmb4

0.982

psma5

0.981

psmb1

0.980

psma1

0.979

psmb2

0.979

psmb3

0.979

psma3

0.977

psma4

0.974

LOC101062730

0.970

ENSTRUP00000070769

0.960

Your Current Organism:

Takifugu rubripes

NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSTRUP00000070769	LOC101062730	ENSTRUP00000070769	ENSTRUP00000022076	Uncharacterized protein KIAA2012 homolog isoform X1.	Proteasome subunit alpha type.	0.995
ENSTRUP00000070769	LOC101077756	ENSTRUP00000070769	ENSTRUP00000004641	Uncharacterized protein KIAA2012 homolog isoform X1.	Proteasome subunit beta.	0.960
ENSTRUP00000070769	psma1	ENSTRUP00000070769	ENSTRUP00000022348	Uncharacterized protein KIAA2012 homolog isoform X1.	Proteasome subunit alpha type.	0.996
ENSTRUP00000070769	psma3	ENSTRUP00000070769	ENSTRUP00000020882	Uncharacterized protein KIAA2012 homolog isoform X1.	Proteasome subunit alpha type.	0.996
ENSTRUP00000070769	psma4	ENSTRUP00000070769	ENSTRUP00000042536	Uncharacterized protein KIAA2012 homolog isoform X1.	Proteasome subunit alpha type.	0.995
ENSTRUP00000070769	psma5	ENSTRUP00000070769	ENSTRUP00000004433	Uncharacterized protein KIAA2012 homolog isoform X1.	Proteasome subunit alpha type.	0.994
ENSTRUP00000070769	psmb1	ENSTRUP00000070769	ENSTRUP00000018371	Uncharacterized protein KIAA2012 homolog isoform X1.	Proteasome subunit beta.	0.997
ENSTRUP00000070769	psmb2	ENSTRUP00000070769	ENSTRUP00000057104	Uncharacterized protein KIAA2012 homolog isoform X1.	Proteasome subunit beta.	0.997
ENSTRUP00000070769	psmb3	ENSTRUP00000070769	ENSTRUP00000058628	Uncharacterized protein KIAA2012 homolog isoform X1.	Proteasome subunit beta.	0.997
ENSTRUP00000070769	psmb4	ENSTRUP00000070769	ENSTRUP00000000321	Uncharacterized protein KIAA2012 homolog isoform X1.	Proteasome subunit beta; Belongs to the peptidase T1B family.	0.997
LOC101062730	ENSTRUP00000070769	ENSTRUP00000022076	ENSTRUP00000070769	Proteasome subunit alpha type.	Uncharacterized protein KIAA2012 homolog isoform X1.	0.995
LOC101062730	LOC101077756	ENSTRUP00000022076	ENSTRUP00000004641	Proteasome subunit alpha type.	Proteasome subunit beta.	0.970
LOC101062730	psma1	ENSTRUP00000022076	ENSTRUP00000022348	Proteasome subunit alpha type.	Proteasome subunit alpha type.	0.999
LOC101062730	psma3	ENSTRUP00000022076	ENSTRUP00000020882	Proteasome subunit alpha type.	Proteasome subunit alpha type.	0.999
LOC101062730	psma4	ENSTRUP00000022076	ENSTRUP00000042536	Proteasome subunit alpha type.	Proteasome subunit alpha type.	0.999
LOC101062730	psma5	ENSTRUP00000022076	ENSTRUP00000004433	Proteasome subunit alpha type.	Proteasome subunit alpha type.	0.999
LOC101062730	psmb1	ENSTRUP00000022076	ENSTRUP00000018371	Proteasome subunit alpha type.	Proteasome subunit beta.	0.999
LOC101062730	psmb2	ENSTRUP00000022076	ENSTRUP00000057104	Proteasome subunit alpha type.	Proteasome subunit beta.	0.999
LOC101062730	psmb3	ENSTRUP00000022076	ENSTRUP00000058628	Proteasome subunit alpha type.	Proteasome subunit beta.	0.999
LOC101062730	psmb4	ENSTRUP00000022076	ENSTRUP00000000321	Proteasome subunit alpha type.	Proteasome subunit beta; Belongs to the peptidase T1B family.	0.998