STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ccdc125Coiled-coil domain containing 125. (627 aa)    
Predicted Functional Partners:
ccdc96
DUF4201 domain-containing protein.
      
 0.566
ccdc92
Coiled-coil domain containing 92.
      
 0.566
tacc1a
TACC_C domain-containing protein.
      
 0.560
bicdl1
BICD family like cargo adaptor 1.
      
 0.503
rasl11b
RAS-like, family 11, member B.
      
 0.497
LOC101064854
A-kinase anchor protein 9-like isoform X1.
      
 0.480
CCDC149
Coiled-coil domain containing 149.
      
 0.480
rad17
RAD17 checkpoint clamp loader component.
 
     0.427
LOC101069619
DUF4201 domain-containing protein.
      
 0.403
POLR2B
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
      
 0.403
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.