Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC101075201Si:ch211-57n23.4. (708 aa)    
Predicted Functional Partners:
appl2
Adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 2.
    
 0.879
appl1
Adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 1.
    
 0.879
ntng1
Netrin g1a.
    
 0.605
H2U447_TAKRU
Vav 3 guanine nucleotide exchange factor b.
    
 0.605
ntn1
Uncharacterized protein.
    
 0.557
LOC101070515
Netrin-1-like.
    
 0.557
H2VCN7_TAKRU
Netrin G2.
    
 0.557
H2VBY0_TAKRU
Netrin g2a.
    
 0.557
H2TLH5_TAKRU
Uncharacterized protein.
    
 0.557
LOC101065496
Netrin 2.
    
 0.557
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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