kdm5a protein (Takifugu rubripes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

kdm5a

Lysine (K)-specific demethylase 5A. (1754 aa)

Predicted Functional Partners:

atp5f1c

0.864

atp5f1d

0.864

atp5f1a

0.864

atp5po

0.864

LOC101074167

0.740

rbbp4

0.740

atp5pd

0.734

atp5pb

0.728

emsy

0.717

ash2l

0.707

Your Current Organism:

Takifugu rubripes

NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC101074167	emsy	ENSTRUP00000001421	ENSTRUP00000030357	WD_REPEATS_REGION domain-containing protein.	EMSY transcriptional repressor, BRCA2 interacting.	0.690
LOC101074167	kdm5a	ENSTRUP00000001421	ENSTRUP00000005012	WD_REPEATS_REGION domain-containing protein.	Lysine (K)-specific demethylase 5A.	0.740
LOC101074167	rbbp4	ENSTRUP00000001421	ENSTRUP00000048021	WD_REPEATS_REGION domain-containing protein.	Retinoblastoma binding protein 4.	0.900
ash2l	emsy	ENSTRUP00000052529	ENSTRUP00000030357	Ash2 like, histone lysine methyltransferase complex subunit.	EMSY transcriptional repressor, BRCA2 interacting.	0.605
ash2l	kdm5a	ENSTRUP00000052529	ENSTRUP00000005012	Ash2 like, histone lysine methyltransferase complex subunit.	Lysine (K)-specific demethylase 5A.	0.707
atp5f1a	atp5f1c	ENSTRUP00000049626	ENSTRUP00000026723	ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane.	ATP synthase subunit gamma.	0.999
atp5f1a	atp5f1d	ENSTRUP00000049626	ENSTRUP00000046322	ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane.	ATP synthase F1 subunit delta.	0.999
atp5f1a	atp5pb	ENSTRUP00000049626	ENSTRUP00000017811	ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane.	ATP synthase peripheral stalk-membrane subunit b.	0.999
atp5f1a	atp5pd	ENSTRUP00000049626	ENSTRUP00000022428	ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane.	ATP synthase peripheral stalk subunit d.	0.999
atp5f1a	atp5po	ENSTRUP00000049626	ENSTRUP00000069814	ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane.	ATP synthase peripheral stalk subunit OSCP.	0.999
atp5f1a	kdm5a	ENSTRUP00000049626	ENSTRUP00000005012	ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane.	Lysine (K)-specific demethylase 5A.	0.864
atp5f1c	atp5f1a	ENSTRUP00000026723	ENSTRUP00000049626	ATP synthase subunit gamma.	ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane.	0.999
atp5f1c	atp5f1d	ENSTRUP00000026723	ENSTRUP00000046322	ATP synthase subunit gamma.	ATP synthase F1 subunit delta.	0.999
atp5f1c	atp5pb	ENSTRUP00000026723	ENSTRUP00000017811	ATP synthase subunit gamma.	ATP synthase peripheral stalk-membrane subunit b.	0.999
atp5f1c	atp5pd	ENSTRUP00000026723	ENSTRUP00000022428	ATP synthase subunit gamma.	ATP synthase peripheral stalk subunit d.	0.999
atp5f1c	atp5po	ENSTRUP00000026723	ENSTRUP00000069814	ATP synthase subunit gamma.	ATP synthase peripheral stalk subunit OSCP.	0.999
atp5f1c	kdm5a	ENSTRUP00000026723	ENSTRUP00000005012	ATP synthase subunit gamma.	Lysine (K)-specific demethylase 5A.	0.864
atp5f1d	atp5f1a	ENSTRUP00000046322	ENSTRUP00000049626	ATP synthase F1 subunit delta.	ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane.	0.999
atp5f1d	atp5f1c	ENSTRUP00000046322	ENSTRUP00000026723	ATP synthase F1 subunit delta.	ATP synthase subunit gamma.	0.999
atp5f1d	atp5pb	ENSTRUP00000046322	ENSTRUP00000017811	ATP synthase F1 subunit delta.	ATP synthase peripheral stalk-membrane subunit b.	0.999