Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
H2RY71_TAKRUIg-like domain-containing protein. (196 aa)    
Predicted Functional Partners:
ENSTRUP00000072695
Ig-like domain-containing protein.
    
 0.887
LOC105419610
Uncharacterized protein LOC105419610 isoform X1.
    
 0.887
Fancm
ERCC4 domain-containing protein.
    
 0.615
mus81
MUS81 structure-specific endonuclease subunit.
    
 0.554
pold2
Polymerase (DNA directed), delta 2, regulatory subunit.
    
 0.504
LOC101063879
SH3 domain-containing protein.
   
 
 0.499
spg21
SPG21 abhydrolase domain containing, maspardin.
      
 0.495
pold1
DNA polymerase.
    
 0.482
smn
Tudor domain-containing protein.
    
 0.478
pold4
Si:dkey-28b4.7.
    
 0.446
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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