Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC101062820Uncharacterized protein. (619 aa)    
Predicted Functional Partners:
DCAF1
DDB1 and CUL4 associated factor 1.
    
 
 0.978
ercc1
Excision repair cross-complementation group 1.
      
 0.878
rnaseh2b
Ribonuclease H2, subunit B.
      
 0.874
rnaseh2a
Ribonuclease; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids; Belongs to the RNase HII family.
      
 0.857
nabp1
Nucleic acid binding protein 1a.
      
 0.856
ddb1
Damage-specific DNA binding protein 1.
    
 
 0.852
LOC101072081
Thymidine kinase 2.
    
 
 0.848
LOC115248709
Thymidine kinase 2.
    
 
 0.848
meiob
Methionine sulfoxide reductase B1b.
   
  
 0.781
ccna2
Cyclin A2; Belongs to the cyclin family.
    
 
 0.778
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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