Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
LOC101072218Threonine aldolase 1. (421 aa)    
Predicted Functional Partners:
gldc
Glycine cleavage system P protein; The glycine cleavage system catalyzes the degradation of glycine.
    
 0.987
LOC101064586
Serine--pyruvate aminotransferase.
    
 0.986
ENSTRUP00000072985
L-threo-3-hydroxyaspartate ammonia-lyase-like isoform X2.
  
 
 0.975
sardh
Sarcosine dehydrogenase.
   
 0.963
gcat
Glycine C-acetyltransferase.
  
 
 0.962
pipox
Pipecolic acid oxidase.
    
 0.949
LOC101066181
Serine dehydratase-like.
  
 
 0.949
shmt1
Serine hydroxymethyltransferase; Interconversion of serine and glycine. Belongs to the SHMT family.
   
 0.949
LOC101067349
Serine hydroxymethyltransferase 2 (mitochondrial).
   
 0.949
SDS
Serine dehydratase.
  
 
 0.949
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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