STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
myocdMyocardin. (909 aa)    
Predicted Functional Partners:
LOC101066372
MADS-box domain-containing protein.
    
 0.856
srf
Serum response factor b.
    
 0.856
nkx2-5
NK2 homeobox 5.
   
  
 0.651
map2k5
Mitogen-activated protein kinase kinase 5; Belongs to the protein kinase superfamily.
   
 0.590
map2k2
Mitogen-activated protein kinase kinase 2a; Belongs to the protein kinase superfamily.
   
 0.590
map2k1
Mitogen-activated protein kinase kinase 1; Belongs to the protein kinase superfamily.
   
 0.590
MAP2K4
Mitogen-activated protein kinase kinase 4.
   
 0.572
map2k4
Protein kinase domain-containing protein.
   
 0.572
mib2
Mindbomb E3 ubiquitin protein ligase 2.
   
 0.521
birc6
Baculoviral IAP repeat containing 6.
   
 0.507
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
Server load: medium (56%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.