LOC101078216 protein (Takifugu rubripes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

LOC101078216

Taxilin gamma. (479 aa)

Predicted Functional Partners:

trappc3

0.749

LOC101065155

0.717

LOC101067086

0.717

LOC101069518

0.717

akap17a

0.695

gtpbp6

0.653

LOC101062280

0.622

LOC101062280-2

0.622

LOC101072900

0.621

asmtl

0.611

Your Current Organism:

Takifugu rubripes

NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC101062280	LOC101078216	ENSTRUP00000009321	ENSTRUP00000006042	StAR-related lipid transfer (START) domain containing 5.	Taxilin gamma.	0.622
LOC101062280	trappc3	ENSTRUP00000009321	ENSTRUP00000040218	StAR-related lipid transfer (START) domain containing 5.	Trafficking protein particle complex subunit; May play a role in vesicular transport from endoplasmic reticulum to Golgi.	0.622
LOC101062280-2	LOC101078216	ENSTRUP00000074337	ENSTRUP00000006042	stAR-related lipid transfer protein 5.	Taxilin gamma.	0.622
LOC101062280-2	trappc3	ENSTRUP00000074337	ENSTRUP00000040218	stAR-related lipid transfer protein 5.	Trafficking protein particle complex subunit; May play a role in vesicular transport from endoplasmic reticulum to Golgi.	0.622
LOC101065155	LOC101067086	ENSTRUP00000027957	ENSTRUP00000050401	Phosphatidylinositol-specific phospholipase C, X domain containing 1.	Protein phosphatase 2, regulatory subunit B'', beta.	0.619
LOC101065155	LOC101072900	ENSTRUP00000027957	ENSTRUP00000049873	Phosphatidylinositol-specific phospholipase C, X domain containing 1.	Uncharacterized protein.	0.611
LOC101065155	LOC101078216	ENSTRUP00000027957	ENSTRUP00000006042	Phosphatidylinositol-specific phospholipase C, X domain containing 1.	Taxilin gamma.	0.717
LOC101065155	akap17a	ENSTRUP00000027957	ENSTRUP00000014010	Phosphatidylinositol-specific phospholipase C, X domain containing 1.	A kinase (PRKA) anchor protein 17A.	0.609
LOC101065155	asmtl	ENSTRUP00000027957	ENSTRUP00000032521	Phosphatidylinositol-specific phospholipase C, X domain containing 1.	Acetylserotonin O-methyltransferase-like.	0.505
LOC101065155	gtpbp6	ENSTRUP00000027957	ENSTRUP00000028206	Phosphatidylinositol-specific phospholipase C, X domain containing 1.	GTP binding protein 6 (putative).	0.746
LOC101067086	LOC101065155	ENSTRUP00000050401	ENSTRUP00000027957	Protein phosphatase 2, regulatory subunit B'', beta.	Phosphatidylinositol-specific phospholipase C, X domain containing 1.	0.619
LOC101067086	LOC101069518	ENSTRUP00000050401	ENSTRUP00000053302	Protein phosphatase 2, regulatory subunit B'', beta.	Uncharacterized protein.	0.619
LOC101067086	LOC101072900	ENSTRUP00000050401	ENSTRUP00000049873	Protein phosphatase 2, regulatory subunit B'', beta.	Uncharacterized protein.	0.518
LOC101067086	LOC101078216	ENSTRUP00000050401	ENSTRUP00000006042	Protein phosphatase 2, regulatory subunit B'', beta.	Taxilin gamma.	0.717
LOC101067086	akap17a	ENSTRUP00000050401	ENSTRUP00000014010	Protein phosphatase 2, regulatory subunit B'', beta.	A kinase (PRKA) anchor protein 17A.	0.609
LOC101067086	asmtl	ENSTRUP00000050401	ENSTRUP00000032521	Protein phosphatase 2, regulatory subunit B'', beta.	Acetylserotonin O-methyltransferase-like.	0.514
LOC101067086	gtpbp6	ENSTRUP00000050401	ENSTRUP00000028206	Protein phosphatase 2, regulatory subunit B'', beta.	GTP binding protein 6 (putative).	0.592
LOC101069518	LOC101067086	ENSTRUP00000053302	ENSTRUP00000050401	Uncharacterized protein.	Protein phosphatase 2, regulatory subunit B'', beta.	0.619
LOC101069518	LOC101072900	ENSTRUP00000053302	ENSTRUP00000049873	Uncharacterized protein.	Uncharacterized protein.	0.611
LOC101069518	LOC101078216	ENSTRUP00000053302	ENSTRUP00000006042	Uncharacterized protein.	Taxilin gamma.	0.717