STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
thoc6THO complex 6. (382 aa)    
Predicted Functional Partners:
thoc1
THO complex 1.
    
 0.999
thoc5
THO complex 5.
   
 0.990
thoc3
THO complex 3.
   
 0.988
thoc7
THO complex 7.
    
 0.987
thoc2
THO complex 2.
    
 0.984
Zc3h13
Uncharacterized protein.
    
 0.940
ALYREF
Aly/REF export factor.
   
 0.911
LOC101064597
Uncharacterized protein.
   
 0.846
LOC101075541
Uncharacterized protein.
   
 0.846
DDX39A
DExD-box helicase 39A.
   
 0.846
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.