STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
riok1RIO kinase 1 (yeast). (568 aa)    
Predicted Functional Partners:
LOC101063739
RNA-binding protein NOB1; May play a role in mRNA degradation. Belongs to the NOB1 family.
   
 0.996
rps2
Ribosomal protein S2; Belongs to the universal ribosomal protein uS5 family.
    
 0.989
ltv1
LTV1 ribosome biogenesis factor.
   
 0.989
fau
40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.
    
  0.988
rps7
40S ribosomal protein S7; Belongs to the eukaryotic ribosomal protein eS7 family.
    
  0.970
rps6
40S ribosomal protein S6; Belongs to the eukaryotic ribosomal protein eS6 family.
  
  0.968
rps9
Ribosomal protein S9; Belongs to the universal ribosomal protein uS4 family.
   
  0.967
rps3
Ribosomal protein S3; Belongs to the universal ribosomal protein uS3 family.
   
 0.955
prmt5
Protein arginine N-methyltransferase 5; Arginine methyltransferase that can both catalyze the formation of omega-N monomethylarginine (MMA) and symmetrical dimethylarginine (sDMA); Belongs to the class I-like SAM-binding methyltransferase superfamily.
    
 
 0.953
rps15
Ribosomal protein S15; Belongs to the universal ribosomal protein uS19 family.
    
 0.940
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.