Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
lrrc73Leucine rich repeat containing 73. (310 aa)    
Predicted Functional Partners:
ankrd13d
Ankyrin repeat domain 13 family, member D.
      
 0.867
tepsin
TEPSIN adaptor related protein complex 4 accessory protein.
      
 0.828
vsig10
Uncharacterized protein.
      
 0.775
vps26a
VPS26, retromer complex component A.
    
 
 0.744
nprl2
NPR2 like, GATOR1 complex subunit.
      
 0.738
vps26b
VPS26, retromer complex component B.
    
 
 0.706
LOC101067116
Uncharacterized protein.
    
 
 0.706
c6h9orf16
UPF0184 protein C9orf16 homolog; Belongs to the UPF0184 (EST00098) family.
      
 0.622
LOC101078809
Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting.
    
   0.592
LOC101078809-2
VPS35 retromer complex component.
    
   0.592
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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