Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-expression
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[Homology]
Score
HERPUD2HERPUD family member 2. (377 aa)    
Predicted Functional Partners:
syvn1
Synovial apoptosis inhibitor 1, synoviolin.
   
 
 0.633
amfr
Autocrine motility factor receptor b.
   
 
 0.629
dnajb9
DnaJ heat shock protein family (Hsp40) member B9b.
   
  
 0.557
sel1l
SEL1L adaptor subunit of ERAD E3 ubiquitin ligase.
    
 
 0.545
atf4
Activating transcription factor 4a.
   
 
 0.526
edem1
alpha-1,2-Mannosidase; Belongs to the glycosyl hydrolase 47 family.
   
  
 0.486
mbtps2
Membrane-bound transcription factor peptidase, site 2.
      
 0.445
hspa5
Heat shock protein 5; Belongs to the heat shock protein 70 family.
   
 
 0.440
xbp1
X-box binding protein 1.
   
 
 0.429
derl2
Derlin-2/3.
   
 
 0.421
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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