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The next version of STRING is ready for use in your analyses: updated networks across STRING newly available directed regulatory networks a new typed view showing functional, physical, and regulatory edges in one network new clustering options and cluster-based layouts … and much more!
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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pctpPhosphatidylcholine transfer protein. (276 aa)    
Predicted Functional Partners:
ENSTRUP00000066035
Elastin-like isoform X1.
      
 0.630
LOC101068534-2
Acyl-CoA thioesterase 13.
    
 
 0.597
stard3
StAR-related lipid transfer (START) domain containing 3.
      
 0.566
LOC101071097
StAR-related lipid transfer (START) domain containing 15.
      
0.543
LOC101062280
StAR-related lipid transfer (START) domain containing 5.
   
  
 0.449
LOC101062280-2
stAR-related lipid transfer protein 5.
   
  
 0.449
gramd1c
GRAM domain containing 1c.
      
 0.403
H2S6A2_TAKRU
PDZ domain-containing protein.
      
 0.403
acot9
Acyl-CoA thioesterase 9, tandem duplicate 2.
      
 0.403
LOC101069469
Steroidogenic acute regulatory protein, mitochondrial; Plays a key role in steroid hormone synthesis by enhancing the metabolism of cholesterol into pregnenolone. Mediates the transfer of cholesterol from the outer mitochondrial membrane to the inner mitochondrial membrane where it is cleaved to pregnenolone.
      
 0.403
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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