Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC101078561Period circadian clock 3. (1258 aa)    
Predicted Functional Partners:
timeless
Timeless circadian clock.
   
 0.858
ENSTRUP00000077772
Cryptochrome circadian regulator 2.
   
 0.838
LOC115248360
Cryptochrome circadian regulator 2.
   
 0.829
fbxw11
F-box and WD repeat domain containing 11b.
    
 0.804
LOC101072059
Cryptochrome circadian regulator 1a.
   
 0.801
ENSTRUP00000025250
annotation not available
    
 0.771
LOC101068125
TPTEP2-CSNK1E readthrough; Belongs to the protein kinase superfamily.
    
 0.771
csnk1d
Casein kinase 1, delta b; Belongs to the protein kinase superfamily.
    
 0.771
CLOCK
Clock circadian regulator a.
    
0.743
arntl
Aryl hydrocarbon receptor nuclear translocator-like 1a.
    
0.716
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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