Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
crlf3Cytokine receptor-like factor 3. (445 aa)    
Predicted Functional Partners:
utp6
UTP6 small subunit processome component.
      
 0.881
phf5a
PHD finger protein 5A.
      
 0.870
LOC101076296
Interleukin enhancer binding factor 3a.
      
 0.714
tefm
Transcription elongation factor, mitochondrial.
      
 0.661
LOC101079219
Apoptosis inhibitor 5.
      
 0.654
LOC101078522
Calcium binding and coiled-coil domain 1a.
      
 0.633
LOC101073629
Uncharacterized protein.
      
 0.633
vps25
Vacuolar protein sorting 25 homolog.
    
   0.630
ilf3
Interleukin enhancer binding factor 3b.
      
 0.630
LOC101063859
Epstein-Barr virus induced 3.
      
 0.628
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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