snapc1 protein (Takifugu rubripes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

snapc1

Small nuclear RNA activating complex, polypeptide 1b. (353 aa)

Predicted Functional Partners:

snapc3

0.992

snapc5

0.980

bdp1

0.888

gtf2b

0.882

polr3d

0.833

brf2

0.805

POLR2E

0.802

crcp

0.802

tbp

0.801

trf3

0.801

Your Current Organism:

Takifugu rubripes

NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
POLR2E	bdp1	ENSTRUP00000046681	ENSTRUP00000054422	RNA polymerase II subunit E.	SANT domain-containing protein.	0.928
POLR2E	brf2	ENSTRUP00000046681	ENSTRUP00000047986	RNA polymerase II subunit E.	BRF2 RNA polymerase III transcription initiation factor subunit.	0.860
POLR2E	crcp	ENSTRUP00000046681	ENSTRUP00000065521	RNA polymerase II subunit E.	Calcitonin gene-related peptide-receptor component protein.	0.995
POLR2E	gtf2b	ENSTRUP00000046681	ENSTRUP00000055433	RNA polymerase II subunit E.	General transcription factor IIB.	0.971
POLR2E	polr3d	ENSTRUP00000046681	ENSTRUP00000008342	RNA polymerase II subunit E.	Polymerase (RNA) III (DNA directed) polypeptide D.	0.997
POLR2E	snapc1	ENSTRUP00000046681	ENSTRUP00000007829	RNA polymerase II subunit E.	Small nuclear RNA activating complex, polypeptide 1b.	0.802
POLR2E	snapc3	ENSTRUP00000046681	ENSTRUP00000024886	RNA polymerase II subunit E.	Small nuclear RNA activating complex, polypeptide 3.	0.844
POLR2E	snapc5	ENSTRUP00000046681	ENSTRUP00000053869	RNA polymerase II subunit E.	Small nuclear RNA activating complex, polypeptide 5.	0.608
POLR2E	tbp	ENSTRUP00000046681	ENSTRUP00000017711	RNA polymerase II subunit E.	TATA box binding protein.	0.919
POLR2E	trf3	ENSTRUP00000046681	ENSTRUP00000023340	RNA polymerase II subunit E.	TATA box-binding protein-like protein 2; TATA box-binding transcription factor. Members of the TBP family are differentially required to regulate transcription and development during early embryogenesis (By similarity).	0.919
bdp1	POLR2E	ENSTRUP00000054422	ENSTRUP00000046681	SANT domain-containing protein.	RNA polymerase II subunit E.	0.928
bdp1	brf2	ENSTRUP00000054422	ENSTRUP00000047986	SANT domain-containing protein.	BRF2 RNA polymerase III transcription initiation factor subunit.	0.998
bdp1	crcp	ENSTRUP00000054422	ENSTRUP00000065521	SANT domain-containing protein.	Calcitonin gene-related peptide-receptor component protein.	0.960
bdp1	gtf2b	ENSTRUP00000054422	ENSTRUP00000055433	SANT domain-containing protein.	General transcription factor IIB.	0.503
bdp1	polr3d	ENSTRUP00000054422	ENSTRUP00000008342	SANT domain-containing protein.	Polymerase (RNA) III (DNA directed) polypeptide D.	0.939
bdp1	snapc1	ENSTRUP00000054422	ENSTRUP00000007829	SANT domain-containing protein.	Small nuclear RNA activating complex, polypeptide 1b.	0.888
bdp1	snapc3	ENSTRUP00000054422	ENSTRUP00000024886	SANT domain-containing protein.	Small nuclear RNA activating complex, polypeptide 3.	0.896
bdp1	snapc5	ENSTRUP00000054422	ENSTRUP00000053869	SANT domain-containing protein.	Small nuclear RNA activating complex, polypeptide 5.	0.568
bdp1	tbp	ENSTRUP00000054422	ENSTRUP00000017711	SANT domain-containing protein.	TATA box binding protein.	0.950
bdp1	trf3	ENSTRUP00000054422	ENSTRUP00000023340	SANT domain-containing protein.	TATA box-binding protein-like protein 2; TATA box-binding transcription factor. Members of the TBP family are differentially required to regulate transcription and development during early embryogenesis (By similarity).	0.950