ENSTRUP00000008050 protein (Takifugu rubripes)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ENSTRUP00000008050

annotation not available (658 aa)

Predicted Functional Partners:

trip12

0.714

ENSTRUP00000085001

0.664

LOC101070351

0.638

ifih1

0.568

ENSTRUP00000058317

0.505

LOC105417201

0.503

LOC101067241

0.503

UBA3

0.501

dhx58

0.500

LOC101068996

0.488

Your Current Organism:

Takifugu rubripes

NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSTRUP00000008050	ENSTRUP00000058317	ENSTRUP00000008050	ENSTRUP00000058317	annotation not available	Polyubiquitin-like.	0.505
ENSTRUP00000008050	ENSTRUP00000085001	ENSTRUP00000008050	ENSTRUP00000085001	annotation not available	annotation not available	0.664
ENSTRUP00000008050	LOC101067241	ENSTRUP00000008050	ENSTRUP00000084184	annotation not available	Proteasome 26S subunit, non-ATPase 4b.	0.503
ENSTRUP00000008050	LOC101068996	ENSTRUP00000008050	ENSTRUP00000042391	annotation not available	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.	0.488
ENSTRUP00000008050	LOC101070351	ENSTRUP00000008050	ENSTRUP00000048748	annotation not available	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.	0.638
ENSTRUP00000008050	LOC105417201	ENSTRUP00000008050	ENSTRUP00000080728	annotation not available	Proteasome 26S subunit, non-ATPase 4a.	0.503
ENSTRUP00000008050	UBA3	ENSTRUP00000008050	ENSTRUP00000031292	annotation not available	Ubiquitin like modifier activating enzyme 3.	0.501
ENSTRUP00000008050	dhx58	ENSTRUP00000008050	ENSTRUP00000083052	annotation not available	DEXH (Asp-Glu-X-His) box polypeptide 58.	0.500
ENSTRUP00000008050	ifih1	ENSTRUP00000008050	ENSTRUP00000003254	annotation not available	Interferon induced with helicase C domain 1.	0.568
ENSTRUP00000008050	trip12	ENSTRUP00000008050	ENSTRUP00000016171	annotation not available	Thyroid hormone receptor interactor 12.	0.714
ENSTRUP00000058317	ENSTRUP00000008050	ENSTRUP00000058317	ENSTRUP00000008050	Polyubiquitin-like.	annotation not available	0.505
ENSTRUP00000058317	ENSTRUP00000085001	ENSTRUP00000058317	ENSTRUP00000085001	Polyubiquitin-like.	annotation not available	0.672
ENSTRUP00000058317	LOC101067241	ENSTRUP00000058317	ENSTRUP00000084184	Polyubiquitin-like.	Proteasome 26S subunit, non-ATPase 4b.	0.767
ENSTRUP00000058317	LOC101068996	ENSTRUP00000058317	ENSTRUP00000042391	Polyubiquitin-like.	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.	0.543
ENSTRUP00000058317	LOC101070351	ENSTRUP00000058317	ENSTRUP00000048748	Polyubiquitin-like.	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.	0.543
ENSTRUP00000058317	LOC105417201	ENSTRUP00000058317	ENSTRUP00000080728	Polyubiquitin-like.	Proteasome 26S subunit, non-ATPase 4a.	0.767
ENSTRUP00000058317	UBA3	ENSTRUP00000058317	ENSTRUP00000031292	Polyubiquitin-like.	Ubiquitin like modifier activating enzyme 3.	0.690
ENSTRUP00000058317	dhx58	ENSTRUP00000058317	ENSTRUP00000083052	Polyubiquitin-like.	DEXH (Asp-Glu-X-His) box polypeptide 58.	0.670
ENSTRUP00000058317	ifih1	ENSTRUP00000058317	ENSTRUP00000003254	Polyubiquitin-like.	Interferon induced with helicase C domain 1.	0.662
ENSTRUP00000058317	trip12	ENSTRUP00000058317	ENSTRUP00000016171	Polyubiquitin-like.	Thyroid hormone receptor interactor 12.	0.935