Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CDR2Uncharacterized protein. (428 aa)    
Predicted Functional Partners:
fgfr1op2
FGFR1 oncogene partner 2.
    
   0.635
LOC115246432
Chromatin licensing and DNA replication factor 1.
   
   0.597
LOC101071855
Chromatin licensing and DNA replication factor 1.
   
   0.597
rpusd2
RNA pseudouridine synthase domain containing 2.
    
   0.582
sike1
Suppressor of IKBKE 1.
    
   0.490
LOC101077107
Fragile X mental retardation, autosomal homolog 2.
      
 0.444
LOC101077435
Si:dkey-222f2.1; Belongs to the intermediate filament family.
   
  
 0.432
LOC101065302
Geminin.
    
   0.402
GMNN
Geminin DNA replication inhibitor.
    
   0.402
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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