STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ighmbp2Immunoglobulin mu DNA binding protein 2. (980 aa)    
Predicted Functional Partners:
yars1
Tyrosine--tRNA ligase.
      
 0.654
gdap1
Ganglioside induced differentiation associated protein 1.
      
 0.566
nthl1
Endonuclease III-like protein 1; Bifunctional DNA N-glycosylase with associated apurinic/apyrimidinic (AP) lyase function that catalyzes the first step in base excision repair (BER), the primary repair pathway for the repair of oxidative DNA damage. The DNA N-glycosylase activity releases the damaged DNA base from DNA by cleaving the N-glycosidic bond, leaving an AP site. The AP lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination. Primarily recognizes and repairs oxidative base damage of pyrimidines; Belongs to the Nth/MutY family.
 
      0.537
ENSTRUP00000082865
Negative elongation factor complex member E.
    
   0.529
abt1
Activator of basal transcription 1.
    
 
 0.527
tut1
Terminal uridylyl transferase 1, U6 snRNA-specific.
   
    0.497
nelfa
Negative elongation factor complex member A.
   
   0.470
Polg2
Uncharacterized protein.
      
 0.436
rpgrip1l
RPGRIP1 like.
      
 0.433
lrsam1
Leucine rich repeat and sterile alpha motif containing 1.
   
  
 0.430
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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