Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
runx2Runt-related transcription factor. (463 aa)    
Predicted Functional Partners:
cbfb
Core-binding factor subunit beta.
    
 0.944
LOC101064892
SRY-box transcription factor 9b.
   
 0.832
yap1
Yes-associated protein 1.
    
 0.832
LOC101069919
GATA binding protein 1a.
    
 0.816
stub1
STIP1 homology and U-Box containing protein 1.
    
 0.807
LOC101065935
T-cell acute lymphocytic leukemia protein 1; Transcription factor that plays a pivotal role in hemopoietic and endothelial development.
    
 0.789
ENSTRUP00000081256
T-cell acute lymphocytic leukemia protein 1.
    
 0.789
LOC101073984
CREB binding protein a.
    
 0.787
LOC101070643
E1A binding protein p300 a.
    
 0.771
ENSTRUP00000064066
E1A binding protein p300 b.
    
 0.771
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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