Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC101077084BHLH domain-containing protein. (261 aa)    
Predicted Functional Partners:
LOC101061382
Uncharacterized protein.
      
 0.885
nkain2
Sodium/potassium transporting ATPase interacting 2.
   
  
 0.875
LOC101071570
Sodium/potassium transporting ATPase interacting 4.
   
  
 0.757
uckl1
Uridine-cytidine kinase; Belongs to the uridine kinase family.
      
 0.729
LOC101063944
PR domain containing 8.
   
 
 0.727
trim54
Tripartite motif containing 54.
      
 0.670
prdm8
PR domain containing 8b.
   
 
 0.652
LOC101073355
DnaJ (Hsp40) homolog, subfamily C, member 5aa.
      
 0.628
Barhl2
BarH-like homeobox 2.
   
  
 0.587
ptf1a
Pancreas associated transcription factor 1a.
   
 
 0.541
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
Server load: medium (44%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.