Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
erhEnhancer of rudimentary homolog; May have a role in the cell cycle. (113 aa)    
Predicted Functional Partners:
chtop
Chromatin target of PRMT1a.
   
 
 0.932
poldip3
Polymerase (DNA-directed), delta interacting protein 3.
   
 
 0.930
snrpg
Small nuclear ribonucleoprotein G.
   
    0.862
snrpd1
Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family.
   
  
 0.857
snrpd3
Small nuclear ribonucleoprotein Sm D3.
   
 
 0.855
LOC101074452
Mago homolog, exon junction complex subunit.
   
   0.848
ciz1
Cdkn1a interacting zinc finger protein 1a.
    
 
 0.839
snrpd2
Small nuclear ribonucleoprotein Sm D2.
   
 
 0.833
LOC101068864
Scaffold attachment factor B.
   
 
 0.814
ALYREF
Aly/REF export factor.
   
 
 0.808
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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