Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
LOC101068864Scaffold attachment factor B. (816 aa)    
Predicted Functional Partners:
erh
Enhancer of rudimentary homolog; May have a role in the cell cycle.
   
 
 0.814
ENSTRUP00000058613
ERH mRNA splicing and mitosis factor.
   
 
 0.814
ncbp2
Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing, translation regulation, nonsense- mediated mRNA decay, RNA-mediated gene silencing (RNAi) by microRNAs (miRNAs) and mRNA export. The CBC complex is involved in mRNA export from the nucleus, leading to the recruitment of the mRNA export machinery to the 5' end of mRNA and to mRNA export in a 5' to 3' direction through the nuclear pore. The CBC complex is also involved in mediating U [...]
    
 
 0.782
hnrnpu
Heterogeneous nuclear ribonucleoprotein Ub.
   
 
 0.729
HNRNPUL1
Heterogeneous nuclear ribonucleoprotein U like 1.
   
 
 0.729
slc31a1
Solute carrier family 31 member 1.
      
 0.660
LOC101075495
Estrogen receptor 2b.
    
 
 0.643
LOC101076140
Estrogen receptor 2a.
    
 
 0.640
zc3h18
Uncharacterized protein.
   
 
 0.631
brix1
Brix domain containing 2.
      
 0.624
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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