STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
robo4Roundabout, axon guidance receptor, homolog 4 (Drosophila). (1063 aa)    
Predicted Functional Partners:
LOC101061888
Slit homolog 1b (Drosophila).
   
 0.765
slit1
Slit homolog 1a (Drosophila).
   
 0.765
LOC101078252
Slit homolog 3 (Drosophila).
   
 0.742
nyx
Nyctalopin.
   
 0.738
utp15
UTP15 small subunit processome component.
   
  
 0.588
rmnd1
Required for meiotic nuclear division 1 homolog.
      
 0.522
LOC101077837
Leucine rich repeat containing 3.
   
 0.516
LRRC3B
Leucine rich repeat containing 3B.
   
 0.516
H2TTL4_TAKRU
LRRNT domain-containing protein.
   
 0.516
lrrc3c
Leucine rich repeat containing 3Ca.
   
 0.516
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.