Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
srsf1Serine and arginine rich splicing factor 1a. (245 aa)    
Predicted Functional Partners:
srsf7
Serine and arginine rich splicing factor 7a.
   
0.993
nxf1
Zgc:153681.
   
 0.985
ALYREF
Aly/REF export factor.
   
 0.974
Srsf10
RRM domain-containing protein.
   
 0.974
LOC101079137
Serine/arginine-rich splicing factor 9-like.
   
  0.971
srpk1
SRSF protein kinase 1a.
    
 0.963
eif4a3
Eukaryotic translation initiation factor 4A3; Belongs to the DEAD box helicase family.
  
 0.961
rbm8a
RNA-binding protein 8A; Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs.
   
 0.960
TRA2B
Transformer 2 beta homolog.
   
 0.955
H2SWV4_TAKRU
RRM domain-containing protein.
   
 0.953
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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