Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
rpp40Ribonuclease P/MRP 40 subunit. (346 aa)    
Predicted Functional Partners:
LOC101073011
Ribonuclease P and MRP subunit p25, b.
    
 0.999
rpp38
Ribosomal_L7Ae domain-containing protein.
    
 0.999
LOC105419223
Uncharacterized protein.
    
 0.999
LOC101067824
POP4 domain-containing protein.
    
 0.997
pop5
Ribonuclease P/MRP protein subunit POP5; Component of ribonuclease P, a protein complex that generates mature tRNA molecules by cleaving their 5'-ends.
    
 0.995
LOC101077808
Ribonuclease P 21 subunit.
    
 0.994
rpp25l
Ribonuclease P/MRP 25 subunit-like.
    
 0.992
pop1
POP1 homolog, ribonuclease P/MRP subunit.
    
 0.991
POP4
POP4 homolog, ribonuclease P/MRP subunit.
    
 0.989
c12h18orf21
Si:dkey-184p18.2.
    
 
 0.952
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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