Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
cd3g/dIg_4 domain-containing protein. (204 aa)    
Predicted Functional Partners:
cd3e
Ig_4 domain-containing protein.
   
 0.999
cd247
Uncharacterized protein.
   
 0.997
syk
Tyrosine-protein kinase.
   
 0.915
zap70
Tyrosine-protein kinase.
   
 0.915
ENSTRUP00000072695
Ig-like domain-containing protein.
   
 0.910
LOC105419610
Uncharacterized protein LOC105419610 isoform X1.
   
 0.910
vcp
Valosin containing protein; Belongs to the AAA ATPase family.
    
 0.874
cd79a
CD79a molecule, immunoglobulin-associated alpha.
   
  
 0.860
sh2d1a
SH2 domain containing 1A duplicate b.
   
  
 0.854
ENSTRUP00000053105
Lymphocyte cytosolic protein 2a.
   
 0.795
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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