rce1 protein (Takifugu rubripes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

rce1

Ras converting CAAX endopeptidase 1a. (316 aa)

Predicted Functional Partners:

icmt

0.974

fnta

0.973

LOC101079983

0.969

zmpste24

0.915

ENSTRUP00000074619

0.903

cog6

0.726

churc1

0.710

cdc25b

0.693

usp36

0.639

usp42

0.639

Your Current Organism:

Takifugu rubripes

NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSTRUP00000074619	LOC101079983	ENSTRUP00000074619	ENSTRUP00000045668	annotation not available	Protein farnesyltransferase subunit beta; Catalyzes the transfer of a farnesyl moiety from farnesyl diphosphate to a cysteine at the fourth position from the C-terminus of several proteins. The beta subunit is responsible for peptide-binding.	0.969
ENSTRUP00000074619	cdc25b	ENSTRUP00000074619	ENSTRUP00000086013	annotation not available	Cell division cycle 25B.	0.693
ENSTRUP00000074619	churc1	ENSTRUP00000074619	ENSTRUP00000046326	annotation not available	Churchill domain containing 1.	0.710
ENSTRUP00000074619	cog6	ENSTRUP00000074619	ENSTRUP00000062194	annotation not available	Conserved oligomeric Golgi complex subunit 6; Required for normal Golgi function.	0.726
ENSTRUP00000074619	fnta	ENSTRUP00000074619	ENSTRUP00000083602	annotation not available	Farnesyltransferase, CAAX box, alpha.	0.973
ENSTRUP00000074619	icmt	ENSTRUP00000074619	ENSTRUP00000079716	annotation not available	Protein-S-isoprenylcysteine O-methyltransferase.	0.974
ENSTRUP00000074619	rce1	ENSTRUP00000074619	ENSTRUP00000008917	annotation not available	Ras converting CAAX endopeptidase 1a.	0.903
ENSTRUP00000074619	usp36	ENSTRUP00000074619	ENSTRUP00000028555	annotation not available	Ubiquitin specific peptidase 36; Belongs to the peptidase C19 family.	0.639
ENSTRUP00000074619	usp42	ENSTRUP00000074619	ENSTRUP00000057143	annotation not available	Ubiquitin specific peptidase 42; Belongs to the peptidase C19 family.	0.639
ENSTRUP00000074619	zmpste24	ENSTRUP00000074619	ENSTRUP00000020895	annotation not available	CAAX prenyl protease; Proteolytically removes the C-terminal three residues of farnesylated proteins; Belongs to the peptidase M48A family.	0.915
LOC101079983	ENSTRUP00000074619	ENSTRUP00000045668	ENSTRUP00000074619	Protein farnesyltransferase subunit beta; Catalyzes the transfer of a farnesyl moiety from farnesyl diphosphate to a cysteine at the fourth position from the C-terminus of several proteins. The beta subunit is responsible for peptide-binding.	annotation not available	0.969
LOC101079983	fnta	ENSTRUP00000045668	ENSTRUP00000083602	Protein farnesyltransferase subunit beta; Catalyzes the transfer of a farnesyl moiety from farnesyl diphosphate to a cysteine at the fourth position from the C-terminus of several proteins. The beta subunit is responsible for peptide-binding.	Farnesyltransferase, CAAX box, alpha.	0.998
LOC101079983	icmt	ENSTRUP00000045668	ENSTRUP00000079716	Protein farnesyltransferase subunit beta; Catalyzes the transfer of a farnesyl moiety from farnesyl diphosphate to a cysteine at the fourth position from the C-terminus of several proteins. The beta subunit is responsible for peptide-binding.	Protein-S-isoprenylcysteine O-methyltransferase.	0.476
LOC101079983	rce1	ENSTRUP00000045668	ENSTRUP00000008917	Protein farnesyltransferase subunit beta; Catalyzes the transfer of a farnesyl moiety from farnesyl diphosphate to a cysteine at the fourth position from the C-terminus of several proteins. The beta subunit is responsible for peptide-binding.	Ras converting CAAX endopeptidase 1a.	0.969
LOC101079983	zmpste24	ENSTRUP00000045668	ENSTRUP00000020895	Protein farnesyltransferase subunit beta; Catalyzes the transfer of a farnesyl moiety from farnesyl diphosphate to a cysteine at the fourth position from the C-terminus of several proteins. The beta subunit is responsible for peptide-binding.	CAAX prenyl protease; Proteolytically removes the C-terminal three residues of farnesylated proteins; Belongs to the peptidase M48A family.	0.945
cdc25b	ENSTRUP00000074619	ENSTRUP00000086013	ENSTRUP00000074619	Cell division cycle 25B.	annotation not available	0.693
cdc25b	rce1	ENSTRUP00000086013	ENSTRUP00000008917	Cell division cycle 25B.	Ras converting CAAX endopeptidase 1a.	0.693
cdc25b	usp36	ENSTRUP00000086013	ENSTRUP00000028555	Cell division cycle 25B.	Ubiquitin specific peptidase 36; Belongs to the peptidase C19 family.	0.591
cdc25b	usp42	ENSTRUP00000086013	ENSTRUP00000057143	Cell division cycle 25B.	Ubiquitin specific peptidase 42; Belongs to the peptidase C19 family.	0.591
churc1	ENSTRUP00000074619	ENSTRUP00000046326	ENSTRUP00000074619	Churchill domain containing 1.	annotation not available	0.710