Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
chtopChromatin target of PRMT1a. (235 aa)    
Predicted Functional Partners:
ALYREF
Aly/REF export factor.
   
 0.987
thoc5
THO complex 5.
   
 0.982
thoc2
THO complex 2.
   
 0.978
thoc1
THO complex 1.
    
 0.974
poldip3
Polymerase (DNA-directed), delta interacting protein 3.
   
 0.968
thoc7
THO complex 7.
    
 0.967
eif4a3
Eukaryotic translation initiation factor 4A3; Belongs to the DEAD box helicase family.
   
 0.958
sarnp
SAP domain-containing protein.
   
 0.951
alyref
RRM domain-containing protein.
   
 0.944
ncbp3
Nuclear cap binding subunit 3.
   
 
 0.935
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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