STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
chtopChromatin target of PRMT1a. (235 aa)    
Predicted Functional Partners:
sarnp
SAP domain-containing protein.
   
 0.897
ALYREF
Aly/REF export factor.
   
 0.871
thoc5
THO complex 5.
   
 0.819
LOC101064597
Uncharacterized protein.
   
 0.813
LOC101075541
Uncharacterized protein.
   
 0.813
DDX39A
DExD-box helicase 39A.
   
 0.813
thoc1
THO complex 1.
    
 0.809
poldip3
Polymerase (DNA-directed), delta interacting protein 3.
   
 0.807
alyref
RRM domain-containing protein.
   
 0.802
thoc2
THO complex 2.
   
 0.802
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.