STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
nfyaNuclear transcription factor Y, alpha, like. (323 aa)    
Predicted Functional Partners:
nfyc
Nuclear transcription factor Y, gamma.
    
 0.998
nfyb
Nuclear transcription factor Y, beta a.
   
 0.998
LOC101067848
Chromatin accessibility complex subunit 1.
    
 0.916
ENSTRUP00000081576
Chromatin accessibility complex subunit 1.
    
 0.916
LOC101063912
Im:7138239.
    
 0.893
ZHX1
Zinc fingers and homeoboxes 1.
    
 
 0.638
sp1
Sp1 transcription factor.
    
 0.626
cops2
COP9 signalosome subunit 2.
      
 0.566
zhx3
Zinc fingers and homeoboxes 3.
    
 
 0.559
LOC101079595
Cellular tumor antigen p53; Acts as a tumor suppressor in many tumor types; induces growth arrest or apoptosis depending on the physiological circumstances and cell type. Involved in cell cycle regulation as a trans-activator that acts to negatively regulate cell division by controlling a set of genes required for this process. One of the activated genes is an inhibitor of cyclin-dependent kinases. Apoptosis induction seems to be mediated either by stimulation of BAX and FAS antigen expression, or by repression of Bcl-2 expression; Belongs to the p53 family.
    
 
 0.518
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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