Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
tbx15T-box transcription factor 15. (610 aa)    
Predicted Functional Partners:
WARS
Tryptophanyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family.
      
 0.700
actr10
Actin related protein 10; Belongs to the actin family.
      
 0.699
wars2
Tryptophanyl tRNA synthetase 2, mitochondrial; Belongs to the class-I aminoacyl-tRNA synthetase family.
      
 0.587
nkx2-5
NK2 homeobox 5.
    
 0.573
tcf21
Transcription factor 21.
     
 0.556
shox2
Short stature homeobox 2.
   
 0.494
shox
Short stature homeobox.
   
 0.494
setd2
SET domain containing 2, histone lysine methyltransferase.
    
 0.476
mdga1
MAM domain containing glycosylphosphatidylinositol anchor 1.
      
 0.467
wt1
WT1 transcription factor b.
      
 0.458
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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