Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
H2SAC3_TAKRUGrowth arrest-specific 1a. (260 aa)    
Predicted Functional Partners:
ptch2
Patched 2.
     
 0.968
ptch1
Patched 1.
     
 0.968
boc
BOC cell adhesion associated, oncogene regulated.
   
 0.950
cdon
Cell adhesion associated, oncogene regulated.
   
 0.950
LOC101064830
Low density lipoprotein receptor-related protein 2b.
     
 0.906
H2V9M6_TAKRU
Uncharacterized protein.
     
 0.906
LOC115252115
Growth arrest-specific protein 1-like.
  
  
 
0.905
H2VEC6_TAKRU
Growth arrest-specific 1b.
  
  
 
0.903
gas2
Growth arrest-specific 2a.
      
 0.889
LOC101066095
Hedgehog protein; Intercellular signal essential for a variety of patterning events during development.
    
 0.860
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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