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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ccdc84Coiled-coil domain containing 84. (354 aa)    
Predicted Functional Partners:
entr1
Uncharacterized protein.
      
 0.603
LOC101076679
tRNA selenocysteine 1 associated protein 1b.
      
 0.565
LOC105417636
Uncharacterized protein LOC105417636.
      
 0.549
mrpl40
Mitochondrial ribosomal protein L40.
      
 0.543
tut1
Terminal uridylyl transferase 1, U6 snRNA-specific.
    
   0.541
txnl4b
Thioredoxin-like protein; Plays role in pre-mRNA splicing. Belongs to the DIM1 family.
    
 
 0.530
mrgbp
MRG/MORF4L binding protein.
   
  
 0.511
prpf3
PRP3 pre-mRNA processing factor 3 homolog (yeast).
    
   0.489
ENSTRUP00000079148
U4/U6 small nuclear ribonucleoprotein Prp3 isoform X1.
    
   0.489
txnl4a
Thioredoxin-like protein; Plays role in pre-mRNA splicing. Belongs to the DIM1 family.
    
 
 0.472
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.