STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
bmi1Bmi1 polycomb ring finger oncogene 1a. (325 aa)    
Predicted Functional Partners:
rnf2
Ring finger protein 2.
   
 0.978
LOC101068461
Chromobox protein homolog 8-like.
    
 0.907
cbx6
Chromobox homolog 6a.
    
 0.896
phc3
Uncharacterized protein.
   
 0.856
LOC101076082
Chromobox 4.
    
 0.834
LOC101075073
Chromobox homolog 4 (Pc class homolog, Drosophila).
    
 0.834
EZH1
Enhancer of zeste 1 polycomb repressive complex 2 subunit.
    
 0.783
H2RV91_TAKRU
Scm polycomb group protein homolog 1.
   
 0.762
LOC101068319
Scm polycomb group protein like 2.
   
 0.762
LOC101067036
Scm polycomb group protein like 2.
   
 0.762
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.