Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC101073281Sortilin. (824 aa)    
Predicted Functional Partners:
ENSTRUP00000053645
annotation not available
   
 
 0.932
H2V4V2_TAKRU
Brain-derived neurotrophic factor; Promotes the survival of neuronal populations that are all located either in the central nervous system or directly connected to it; Belongs to the NGF-beta family.
    
 
 0.911
LOC101078112
Sortilin.
  
  
0.904
lrpap1
Low density lipoprotein receptor-related protein associated protein 1.
    
 
 0.876
GGA1
Golgi associated, gamma adaptin ear containing, ARF binding protein 1.
    
 
 0.758
LOC101078557
Uncharacterized protein.
    
 
 0.758
grn
Granulin b.
    
 
 0.756
LOC101069841
Uncharacterized protein.
    
 
 0.756
ENSTRUP00000049375
GRANULINS domain-containing protein.
    
 
 0.756
LOC101074958
Uncharacterized protein.
    
 
 0.725
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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