Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC101079649LHFPL tetraspan subfamily member 4b. (253 aa)    
Predicted Functional Partners:
mtrex
Mtr4 exosome RNA helicase.
      
 0.653
slc16a5
Solute carrier family 16 member 5a.
      
 0.631
scel
LIM zinc-binding domain-containing protein.
      
 0.518
ENSTRUP00000018373
Delta/notch-like EGF repeat containing.
     
 0.488
LOC101074126
Uncharacterized protein; Belongs to the peptidase S1 family.
      
 0.475
H2TI60_TAKRU
Uncharacterized protein.
     
 0.403
CD109
CD109 antigen-like.
     
 0.403
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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